Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs11187122 chr10:94419066 C/A 0.000123 500 31.47 33.93 18.55 KM Plot
THCA rs111881626 chr19:9896087 T/G 4.86E-6 497 31.47 33.22 32.9 KM Plot
THCA rs111905354 chr10:131974461 G/A 1.23E-5 501 31.47 32.37 27.18 KM Plot
THCA rs11191437 chr10:104637759 C/T 2.79E-9 500 31.03 35.33 29.58 KM Plot
THCA rs11191439 chr10:104638723 C/T 6.85E-14 503 18.75 36.17 31.15 KM Plot
THCA rs11191445 chr10:104651055 C/T 7.75E-14 501 31.15 36.17 32.1 KM Plot
THCA rs11191446 chr10:104651480 A/G 2.91E-9 501 31.03 35.33 29.58 KM Plot
THCA rs11191473 chr10:104710710 C/G 7.53E-14 502 31.03 36.02 32.1 KM Plot
THCA rs11191490 chr10:104745174 T/A 7.04E-14 502 31.15 36.17 32.1 KM Plot
THCA rs11191523 chr10:104792400 A/G 7.37E-14 501 31.27 35.87 32.1 KM Plot
THCA rs11191524 chr10:104793040 G/A 7.37E-14 501 31.27 35.87 32.1 KM Plot
THCA rs11191525 chr10:104793435 G/C 7.37E-14 501 31.27 35.87 32.1 KM Plot
THCA rs11191545 chr10:104829793 C/T 7.68E-14 503 31.32 35.08 32.1 KM Plot
THCA rs11194453 chr10:110950909 A/T 0.00014 500 31.47 32.9 32.1 KM Plot
THCA rs11194454 chr10:110952486 A/C 0.000132 503 32.1 32.9 31.47 KM Plot